Bonuses from CompanionMod granted abiltiies not applying properly

As part of the Companion Testing, I decided to use ABILITY:Animal Trick|NORMAL|Animal Training ~ blah

It now works, but the AbilityPool shows a Pool Count of '0' and Available of '-6'. The Correct Values should be '7' and '1'. However, Should I try to remove the Ability in question, it doesn't remove, but the Pools both update and correctly reflect the correct values.