For some reason when I try to add Ninja Level 1 to any character after setting up my ability scores and race it pops up with an error saying "This character does not qualify for level 1", I have tried different races and any other combination I could think of. In the drop down list it doesn't highlight the Ninja class in red and the only requirement I see in the Classes tab is that I can't have any levels in Rogue.
Windows 7 x64
If you switch to the classes tab and select Ninja there it will show you
what the requirements for the class are. Which ones are shown in red?
PCGen Code SB
This was fixed as
Completed: At revision: 21398
I attached fixed files there if you need this ASAP. Otherwise, you can grab the autobuild.