I've wanted to make a Lawful Evil Rogue and the system blocks me because Rogue is marked as Any not LE, CE or NE. I've looked in my Core Rulebook and also on the PFSRD and it is clearly marked as any alignment.
Win10 x64
Pathfinder Society book package
Don't use Pathfinder Society rules if you don't want to be restricted by Pathfinder Society rules.
With https://github.com/PCGen/pcgen/pull/1241
It will now be impossible for a user to inadvertently use the PFS rules unintentionally.