I was trying to create an Aasimar Cleric of Sarenrae. Neutral Good alignment, same as Sarenrae. When selecting my domains, it would allow me to only select domains, not subdomains as it should allow. Sarenrae gives access to the Medicine subdomain of Healing.
The character is an Aasiamar Cleric of Sarenrae who has the Angelfire Apostle and Divine Paragon Archetypes. Neither of those affect the other, and shouldn't affect the selection of domains either.
The issue I see, is that when selecting any domain with the cleric base class, PCGen does not allow for the selection of any alternative choices for domains except for the Inquisition alternatives.
This program is awesome so far, and this has been the only issue I have seen so far. Though the program is a little clunky at times and should follow slightly more of a logical step process for creating characters.
Sorry I do not have any error codes, or pictures. I am not that fluent in computer coding any more.