I created a half-orc using the racial trait "sacred tattoo" which provides a +1 luck bonus to all saves. I then gave the character the trait "Fate's Favored" which increases all luck bonuses by one. However, after selecting these the luck bonus still only calculates on +1 in all of the saves rather than +2.
This was fixed during the 6.06.01 series. Please download PCGen v.6.06.01
See – - Please implement "Fates Favored" to alter Luck bonuses on character
After downloading version 6.06.01 I confirmed the luck bonus was now calculating properly. This is a non-issue and I will close the ticket. Thank you for the assistance.
Issue was resolved by upgrading to latest version.