See the attached PCG file.
I've just created a Human Mage of 1st Level (Intelligent Wizard) and it's calculated the correct number of skill ranks but it isn't allowing me to spend them.
It doesn't seem to have calculated the Max Skill Ranks as the following requirement is highlighted in Red:
Requirements: var: skillinfo("TOTALRANK","Search") at most MaxRankSearch
Windows 8.1, Java 1.7
PCGen 6.03.00A, FantasyCraft Books Rev1.11