The newest PCgen version broke the workaround for the Monk Flurry of Blows. The html preview is still incorrect (+11/+11/+11/+6 instead of +11/+11/+6/+6) but now the outputsheets have the same problem. The workaround is still in the files (I checked) but no longer working.
Also, Power Attack (Flurry) is using the wrong scaling. It seems to be using Monk BAB scaling (3/4) instead of Flurry BAB (Full) scaling. There is a FAQ entry that confirms this:
http://paizo.com/paizo/faq/v5748nruor1fm#v5748eaic9o72
Power Attack Flurry should be -3 hit/+6 damage instead of -2 hit/+4 damage.
And lastly, enlarge person seems to increase the damage dice by 2 steps instead of one. 1d10 should become 2d8, but becomes 3d8 instead.
This handles the Pathfinder Monk Flurry. PDF only
Included the HTM and Preview sheet for Standard.
Power Attack is a completely separate issue and will not be addressed. That will be handled when the new Formula Parser is in place. This is strictly a temporary measure to support a correct output in the basic format.
Enlarge/Reduce is also a separate issue and should have been addressed in another tracker.