in PCGen 60201, Pathfinder character is output OK.
I have problems in more recent versions (specifically 60501, but it affects 6.03.06 onwards, to varying degrees)
in 6.02.01, the whole of special qualities is in the first column, then there's a column wrap for Feats.
in 6.03.06, the Special Qualities split in the middle of Undead Traits, even though there's plenty of space to go.
in 6.05.02, the split is terrible - in the middle of the first trait - Darkvision - so that in trun, Feats is pushed across the next page boundary.
See attached PCG and PDFs.
All exported with Fantasy Standard, and with Display Option: Show feat Description checked.